Glyma13g05710 - SoyBase

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Report for Sequence Feature Glyma13g05710

Feature Type:	gene_model
Chromosome:	Gm13
Start:	6066221
stop:	6072248
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g05710

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G39420	AT	Annotation by Michelle Graham. TAIR10: CDC2C \| chr5:15772232-15774929 FORWARD LENGTH=644	SoyBase	E_val: 0	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0009860	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen tube growth	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG0600	KOG	Cdc2-related protein kinase	JGI		ISS
PTHR24056	Panther	CELL DIVISION PROTEIN KINASE	JGI		ISS
PTHR24056:SF77	Panther		JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
UniRef100_G7KLB8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Serine/threonine protein kinase n=1 Tax=Medicago truncatula RepID=G7KLB8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233C0BD	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233C0BD related cluster n=1 Tax=unknown RepID=UPI000233C0BD	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g05710

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g05710

Paralog	Evidence	Comments
Glyma19g03140	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g05710 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g060300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g05710

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g05710

Limit To All Plant Sequences

>Glyma13g05710.3   sequence type=transcript   gene model=Glyma13g05710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCTGACTCACGAATTTCTGTTCCTCTCCCTTTTGGCACTTAAAATTCCTCCAACCCCCCATTCCCCTCTGGGAAACAGGGGAAGAGAGAGAGAGAAAAAAAACAGGGGAGGGAAGGGGTTGCTCTATCACTTTGTTCTGTTCCACAACAAAGCCACCATTTTCCCCTGTGAATCTCGCACACCCTCTGGGGAAAAGAAAATCCCAAAAAGGGTTGCATCGAATTGCACGGAACAGAGACACAGAGATAAAAAAAAAACAAAAACAAAAAACAGGGGAGGAGAGAGAAAAAAAAACAGGGGAGGAACGAAGCTGCCATTTTTGCTGCAATTCCAAATGCCATTGTTTCTGAGTTTTGCTCATCACGCTCTCTTTTGAATCCCCTTGTGCTGGGGAAGCAACCACATTGGGGGGTGCTGATGTAGGGGAAACTCTCCCCTACCATCAACATCATCCAATTCTTTCTTCTTCTTAATAAAAAAAAATGGGTTGCATAAGCTCCAAGAATGCGGTTGCCAGAACTTGTTCTCCGTCGCCCGCAGTACTCGACATTGCAGAGCCGAACCCCGCTTATGCCAAGGGCCATTCCTGGTTGCCGGTTTTGGAATCCAAAACGGGTTCAGAGGATGAGAGGAGCAATAGCAAGTTCAGGAAGAACAGTTCAAAGAAGAGTAGTGGGTCTTTCAGCTTCAGGCATGTGGAGGCTGAACAGAATGCTGCTGGTTGGCCCCCTTGGCTCATAGCTACTGCAGCAGAAGCCATTCAAGGATGGATCCCTCTCAAAGCTGATTCTTTTCAAAAGTTGGAAAAGATTGGAGAAGGTACATATAGCAGTGTGTTCCGAGCACGTGAAGTTGAAACTGGGAAGATGTTTGCTTTGAAGAAGGTGCGCTTTGACAATTTCCAACCTGAGAGCATTAGGTTCATGGCAAGAGAAATAACAATCCTCCGCAGGCTTGATCACCCAAACATCATGAAATTGGAAGGCATAATCACTTCTCGCCTATCAAACAGCATATATCTTGTGTTTGAATACATGGAGCATGATCTTGCTGGCCTAGTATCACGTCCTGATATTGTGTTCTCCGAATCACAGATAAAATGTTACATGAGGCAACTATTAAGTGGACTTGAGCATTGTCATATGCGTGGCATCATGCATAGAGACATCAAATTATCAAATATCTTGTTGAACAATGAAGGTGTTCTCAAGATAGGAGATTTTGGATTAGCAAATACAATTAGCACAAATAGCAAGCATCATTTGACAAGTCGCGTAGTGACTTTGTGGTATCGCCCTCCTGAGCTCTTGATGGGATCAACCAACTATGGAGTGTCAGTGGATCTGTGGAGTGTGGGCTGTGTATTTGCAGAACTTTTTCTTGGGAAGCCTATCCTTAAGGGGAGAACTGAGGTTGAACAATTACACAAAATTTTTAAGCTGTGTGGTTCTCCACCTGAGGAGTTCTGGAAAAAGACTAAGCTTCCTCATGCAACAATGTTTAAACCTCAGACTAATTATGAAAGCTCTCTTCGGGAGAGGTGTGCAGATTTTCCTGCATCTGCTGTAAATCTACTCGAGACTTTATTGTCGATTGATCCAGGCAACCGAGGGACTGCCTCATCTGCCCTAATGTCTGAGTATTTCAGCACCAAGCCATATGCTTGTAATGCATCAAGCCTGCCAAAGTATCCACCTAGCAAAGAAATGGATGCCAAAAGTATGGGAGATTCATCCAGGAAAAAGACTGGAGGTAAAATGAGAGAGGTTGCAACATCAAGAAGGCAGCAAAGACGGGTTAGTAAAATTTTGCAAGATCCAAACAATTTCGGCAAATCAATTTCAAAAGAGAACATTTCTGAAAATGCTCGTAGAGATGATGGTAAAGCACATCTTACAAAGGGAAAAGGAGGGGCCATGCACAAAGATTATACAAAGTCTCATTTGGATGCTATGTCTGAGACCTCCCAAATGAATGTTGCTAATGGTAATGGCTATAGTGTGGGATCTAATAATACCTTTACATGGGTAAAAAGGAGAAAACAAGATGCATCTTCAACTCTATCAGATGGATCAAGAAGCAAAATTAGTGCACTGGATCCAAACTTTGCAAAACGCACATATGACTTAACCACACTCAGGGTGTCCATGGATTTAGATCCTGAAGAACTGATGAATGCTCAGGGTGACAGAGGGCGTGCTGTTCGTAAATCAAGATTTGGAAGAGACAACAGATGAGGCAAGGATTGCAGGAGTGGTGCAATGCTAACCACTTTAAGGGTGCCTGACATCTTGCTGAACCATCATAGTTTTTGACTTACCTCTACCAACATCTTGGTGGCACTTCCTTCCTTTTGATCACAAGAGTTTACTGTTCATACCCTTCTATTGTACAGGATTAACAATAATCAAATATAGGATTACAGTATACACATGTAACGATGCCAAAATGGAAGATGATACAATTATGAATGATTTACTTTTCTGATGGAATTTCACTATCTTGGTACATGCCAATTTTCTCTCAATGTAAGATTTAAAAAAAGAAGAATAAACTACAAAGAAAAAGTACTTTGACATATCCTGTTCTTGGAAAATCTATCTGGAGTTTTGGATCACAAATAATCAACAACAACGAAGTTAAGGCCATAGTGACTTTTCTTACATGTATGCTCATG

Coding sequences of Glyma13g05710

Limit To All Plant Sequences

>Glyma13g05710.2   sequence type=CDS   gene model=Glyma13g05710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTGCATAAGCTCCAAGAATGCGGTTGCCAGAACTTGTTCTCCGTCGCCCGCAGTACTCGACATTGCAGAGCCGAACCCCGCTTATGCCAAGGGCCATTCCTGGTTGCCGGTTTTGGAATCCAAAACGGGTTCAGAGGATGAGAGGAGCAATAGCAAGTTCAGGAAGAACAGTTCAAAGAAGAGTAGTGGGTCTTTCAGCTTCAGGCATGTGGAGGCTGAACAGAATGCTGCTGGTTGGCCCCCTTGGCTCATAGCTACTGCAGCAGAAGCCATTCAAGGATGGATCCCTCTCAAAGCTGATTCTTTTCAAAAGTTGGAAAAGATTGGAGAAGGTACATATAGCAGTGTGTTCCGAGCACGTGAAGTTGAAACTGGGAAGATGTTTGCTTTGAAGAAGGTGCGCTTTGACAATTTCCAACCTGAGAGCATTAGGTTCATGGCAAGAGAAATAACAATCCTCCGCAGGCTTGATCACCCAAACATCATGAAATTGGAAGGCATAATCACTTCTCGCCTATCAAACAGCATATATCTTGTGTTTGAATACATGGAGCATGATCTTGCTGGCCTAGTATCACGTCCTGATATTGTGTTCTCCGAATCACAGATAAAATGTTACATGAGGCAACTATTAAGTGGACTTGAGCATTGTCATATGCGTGGCATCATGCATAGAGACATCAAATTATCAAATATCTTGTTGAACAATGAAGGTGTTCTCAAGATAGGAGATTTTGGATTAGCAAATACAATTAGCACAAATAGCAAGCATCATTTGACAAGTCGCGTAGTGACTTTGTGGTATCGCCCTCCTGAGCTCTTGATGGGATCAACCAACTATGGAGTGTCAGTGGATCTGTGGAGTGTGGGCTGTGTATTTGCAGAACTTTTTCTTGGGAAGCCTATCCTTAAGGGGAGAACTGAGGTTGAACAATTACACAAAATTTTTAAGCTGTGTGGTTCTCCACCTGAGGAGTTCTGGAAAAAGACTAAGCTTCCTCATGCAACAATGTTTAAACCTCAGACTAATTATGAAAGCTCTCTTCGGGAGAGGTGTGCAGATTTTCCTGCATCTGCTGTAAATCTACTCGAGACTTTATTGTCGATTGATCCAGGCAACCGAGGGACTGCCTCATCTGCCCTAATGTCTGAGTATTTCAGCACCAAGCCATATGCTTGTAATGCATCAAGCCTGCCAAAGTATCCACCTAGCAAAGAAATGGATGCCAAAAGTATGGGAGATTCATCCAGGAAAAAGACTGGAGGTAAAATGAGAGAGGTTGCAACATCAAGAAGGCAGCAAAGACGGGTTAGTAAAATTTTGCAAGATCCAAACAATTTCGGCAAATCAATTTCAAAAGAGGACACGCAGAACATTTCTGAAAATGCTCGTAGAGATGATGGTAAAGCACATCTTACAAAGGGAAAAGGAGGGGCCATGCACAAAGATTATACAAAGTCTCATTTGGATGCTATGTCTGAGACCTCCCAAATGAATGTTGCTAATGGTAATGGCTATAGTGTGGGATCTAATAATACCTTTACATGGGTAAAAAGGAGAAAACAAGATGCATCTTCAACTCTATCAGATGGATCAAGAAGCAAAATTAGTGCACTGGATCCAAACTTTGCAAAACGCACATATGACTTAACCACACTCAGGGTGTCCATGGATTTAGATCCTGAAGAACTGATGAATGCTCAGGGTGACAGAGGGCGTGCTGTTCGTAAATCAAGATTTGGAAGAGACAACAGATGA

>Glyma13g05710.3   sequence type=CDS   gene model=Glyma13g05710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTGCATAAGCTCCAAGAATGCGGTTGCCAGAACTTGTTCTCCGTCGCCCGCAGTACTCGACATTGCAGAGCCGAACCCCGCTTATGCCAAGGGCCATTCCTGGTTGCCGGTTTTGGAATCCAAAACGGGTTCAGAGGATGAGAGGAGCAATAGCAAGTTCAGGAAGAACAGTTCAAAGAAGAGTAGTGGGTCTTTCAGCTTCAGGCATGTGGAGGCTGAACAGAATGCTGCTGGTTGGCCCCCTTGGCTCATAGCTACTGCAGCAGAAGCCATTCAAGGATGGATCCCTCTCAAAGCTGATTCTTTTCAAAAGTTGGAAAAGATTGGAGAAGGTACATATAGCAGTGTGTTCCGAGCACGTGAAGTTGAAACTGGGAAGATGTTTGCTTTGAAGAAGGTGCGCTTTGACAATTTCCAACCTGAGAGCATTAGGTTCATGGCAAGAGAAATAACAATCCTCCGCAGGCTTGATCACCCAAACATCATGAAATTGGAAGGCATAATCACTTCTCGCCTATCAAACAGCATATATCTTGTGTTTGAATACATGGAGCATGATCTTGCTGGCCTAGTATCACGTCCTGATATTGTGTTCTCCGAATCACAGATAAAATGTTACATGAGGCAACTATTAAGTGGACTTGAGCATTGTCATATGCGTGGCATCATGCATAGAGACATCAAATTATCAAATATCTTGTTGAACAATGAAGGTGTTCTCAAGATAGGAGATTTTGGATTAGCAAATACAATTAGCACAAATAGCAAGCATCATTTGACAAGTCGCGTAGTGACTTTGTGGTATCGCCCTCCTGAGCTCTTGATGGGATCAACCAACTATGGAGTGTCAGTGGATCTGTGGAGTGTGGGCTGTGTATTTGCAGAACTTTTTCTTGGGAAGCCTATCCTTAAGGGGAGAACTGAGGTTGAACAATTACACAAAATTTTTAAGCTGTGTGGTTCTCCACCTGAGGAGTTCTGGAAAAAGACTAAGCTTCCTCATGCAACAATGTTTAAACCTCAGACTAATTATGAAAGCTCTCTTCGGGAGAGGTGTGCAGATTTTCCTGCATCTGCTGTAAATCTACTCGAGACTTTATTGTCGATTGATCCAGGCAACCGAGGGACTGCCTCATCTGCCCTAATGTCTGAGTATTTCAGCACCAAGCCATATGCTTGTAATGCATCAAGCCTGCCAAAGTATCCACCTAGCAAAGAAATGGATGCCAAAAGTATGGGAGATTCATCCAGGAAAAAGACTGGAGGTAAAATGAGAGAGGTTGCAACATCAAGAAGGCAGCAAAGACGGGTTAGTAAAATTTTGCAAGATCCAAACAATTTCGGCAAATCAATTTCAAAAGAGAACATTTCTGAAAATGCTCGTAGAGATGATGGTAAAGCACATCTTACAAAGGGAAAAGGAGGGGCCATGCACAAAGATTATACAAAGTCTCATTTGGATGCTATGTCTGAGACCTCCCAAATGAATGTTGCTAATGGTAATGGCTATAGTGTGGGATCTAATAATACCTTTACATGGGTAAAAAGGAGAAAACAAGATGCATCTTCAACTCTATCAGATGGATCAAGAAGCAAAATTAGTGCACTGGATCCAAACTTTGCAAAACGCACATATGACTTAACCACACTCAGGGTGTCCATGGATTTAGATCCTGAAGAACTGATGAATGCTCAGGGTGACAGAGGGCGTGCTGTTCGTAAATCAAGATTTGGAAGAGACAACAGATGA

Predicted protein sequences of Glyma13g05710

Limit To All Plant Sequences

>Glyma13g05710.2   sequence type=predicted peptide   gene model=Glyma13g05710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGCISSKNAVARTCSPSPAVLDIAEPNPAYAKGHSWLPVLESKTGSEDERSNSKFRKNSSKKSSGSFSFRHVEAEQNAAGWPPWLIATAAEAIQGWIPLKADSFQKLEKIGEGTYSSVFRAREVETGKMFALKKVRFDNFQPESIRFMAREITILRRLDHPNIMKLEGIITSRLSNSIYLVFEYMEHDLAGLVSRPDIVFSESQIKCYMRQLLSGLEHCHMRGIMHRDIKLSNILLNNEGVLKIGDFGLANTISTNSKHHLTSRVVTLWYRPPELLMGSTNYGVSVDLWSVGCVFAELFLGKPILKGRTEVEQLHKIFKLCGSPPEEFWKKTKLPHATMFKPQTNYESSLRERCADFPASAVNLLETLLSIDPGNRGTASSALMSEYFSTKPYACNASSLPKYPPSKEMDAKSMGDSSRKKTGGKMREVATSRRQQRRVSKILQDPNNFGKSISKEDTQNISENARRDDGKAHLTKGKGGAMHKDYTKSHLDAMSETSQMNVANGNGYSVGSNNTFTWVKRRKQDASSTLSDGSRSKISALDPNFAKRTYDLTTLRVSMDLDPEELMNAQGDRGRAVRKSRFGRDNR*

>Glyma13g05710.3   sequence type=predicted peptide   gene model=Glyma13g05710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGCISSKNAVARTCSPSPAVLDIAEPNPAYAKGHSWLPVLESKTGSEDERSNSKFRKNSSKKSSGSFSFRHVEAEQNAAGWPPWLIATAAEAIQGWIPLKADSFQKLEKIGEGTYSSVFRAREVETGKMFALKKVRFDNFQPESIRFMAREITILRRLDHPNIMKLEGIITSRLSNSIYLVFEYMEHDLAGLVSRPDIVFSESQIKCYMRQLLSGLEHCHMRGIMHRDIKLSNILLNNEGVLKIGDFGLANTISTNSKHHLTSRVVTLWYRPPELLMGSTNYGVSVDLWSVGCVFAELFLGKPILKGRTEVEQLHKIFKLCGSPPEEFWKKTKLPHATMFKPQTNYESSLRERCADFPASAVNLLETLLSIDPGNRGTASSALMSEYFSTKPYACNASSLPKYPPSKEMDAKSMGDSSRKKTGGKMREVATSRRQQRRVSKILQDPNNFGKSISKENISENARRDDGKAHLTKGKGGAMHKDYTKSHLDAMSETSQMNVANGNGYSVGSNNTFTWVKRRKQDASSTLSDGSRSKISALDPNFAKRTYDLTTLRVSMDLDPEELMNAQGDRGRAVRKSRFGRDNR*

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